genomescope2
Link to section 'Introduction' of 'genomescope2' Introduction
Genomescope2: Reference-free profiling of polyploid genomes.
For more information, please check its website: https://biocontainers.pro/tools/genomescope2 and its home page on Github.
Link to section 'Versions' of 'genomescope2' Versions
- 2.0
Link to section 'Commands' of 'genomescope2' Commands
- genomescope2
Link to section 'Module' of 'genomescope2' Module
You can load the modules by:
module load biocontainers
module load genomescope2
Link to section 'Example job' of 'genomescope2' Example job
Using #!/bin/sh -l as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use #!/bin/bash instead.
To run Genomescope2 on our clusters:
#!/bin/bash
#SBATCH -A myallocation # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=genomescope2
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out
module --force purge
ml biocontainers genomescope2
wget https://raw.githubusercontent.com/schatzlab/genomescope/master/analysis/real_data/ara_F1_21.hist
genomescope2 -i ara_F1_21.hist -o output -k 21