genemarks-2
Link to section 'Introduction' of 'genemarks-2' Introduction
GeneMarkS-2 combines GeneMark.hmm (prokaryotic) and GeneMark (prokaryotic) with a self-training procedure that determines parameters of the models of both GeneMark.hmm and GeneMark.
Home page: http://opal.biology.gatech.edu/GeneMark/
Link to section 'Versions' of 'genemarks-2' Versions
- 1.14_1.25
Link to section 'Commands' of 'genemarks-2' Commands
- gms2.pl
- biogem
- compp
- gmhmmp2
Link to section 'Module' of 'genemarks-2' Module
You can load the modules by:
module load biocontainers
module load genemarks-2
Link to section 'Example job' of 'genemarks-2' Example job
Using #!/bin/sh -l as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use #!/bin/bash instead.
To run genemarks-2 on our clusters:
#!/bin/bash
#SBATCH -A myallocation # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=genemarks-2
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out
module --force purge
ml biocontainers genemarks-2