mcl
Link to section 'Introduction' of 'mcl' Introduction
Mcl is short for the Markov Cluster Algorithm, a fast and scalable unsupervised cluster algorithm for graphs.
For more information, please check its website: https://biocontainers.pro/tools/mcl and its home page: http://micans.org/mcl/.
Link to section 'Versions' of 'mcl' Versions
- 14.137-pl5262
Link to section 'Commands' of 'mcl' Commands
- clm
- clmformat
- clxdo
- mcl
- mclblastline
- mclcm
- mclpipeline
- mcx
- mcxarray
- mcxassemble
- mcxdeblast
- mcxdump
- mcxi
- mcxload
- mcxmap
- mcxrand
- mcxsubs
Link to section 'Module' of 'mcl' Module
You can load the modules by:
module load biocontainers
module load mcl
Link to section 'Example job' of 'mcl' Example job
Using #!/bin/sh -l as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use #!/bin/bash instead.
To run Mcl on our clusters:
#!/bin/bash
#SBATCH -A myallocation # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=mcl
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out
module --force purge
ml biocontainers mcl