regtools
Link to section 'Introduction' of 'regtools' Introduction
Regtools are tools that integrate DNA-seq and RNA-seq data to help interpret mutations in a regulatory and splicing context.
Docker hub: https://hub.docker.com/r/griffithlab/regtools/
Home page: https://github.com/griffithlab/regtools
Link to section 'Versions' of 'regtools' Versions
- 1.0.0
Link to section 'Commands' of 'regtools' Commands
- regtools
Link to section 'Module' of 'regtools' Module
You can load the modules by:
module load biocontainers
module load regtools
Link to section 'Example job' of 'regtools' Example job
Using #!/bin/sh -l as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use #!/bin/bash instead.
To run regtools on our clusters:
#!/bin/bash
#SBATCH -A myallocation # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=regtools
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out
module --force purge
ml biocontainers regtools