seqyclean
Link to section 'Introduction' of 'seqyclean' Introduction
Seqyclean is used to pre-process NGS data in order to prepare for downstream analysis.
For more information, please check:
Docker hub: https://hub.docker.com/r/staphb/seqyclean
Home page: https://github.com/ibest/seqyclean
Link to section 'Versions' of 'seqyclean' Versions
- 1.10.09
Link to section 'Commands' of 'seqyclean' Commands
- seqyclean
Link to section 'Module' of 'seqyclean' Module
You can load the modules by:
module load biocontainers
module load seqyclean
Link to section 'Example job' of 'seqyclean' Example job
Using #!/bin/sh -l as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use #!/bin/bash instead.
To run seqyclean on our clusters:
#!/bin/bash
#SBATCH -A myallocation # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=seqyclean
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out
module --force purge
ml biocontainers seqyclean