snap-aligner
Link to section 'Introduction' of 'snap-aligner' Introduction
Snap-aligner (Scalable Nucleotide Alignment Program) is a fast and accurate read aligner for high-throughput sequencing data.
For more information, please check its website: https://biocontainers.pro/tools/snap-aligner and its home page: http://snap.cs.berkeley.edu/.
Link to section 'Versions' of 'snap-aligner' Versions
- 2.0.0
Link to section 'Commands' of 'snap-aligner' Commands
- snap-aligner
Link to section 'Module' of 'snap-aligner' Module
You can load the modules by:
module load biocontainers
module load snap-aligner
Link to section 'Example job' of 'snap-aligner' Example job
Using #!/bin/sh -l as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use #!/bin/bash instead.
To run Snap-aligner on our clusters:
#!/bin/bash
#SBATCH -A myallocation # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=snap-aligner
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out
module --force purge
ml biocontainers snap-aligner