r
Link to section 'Introduction' of 'r' Introduction
R
is a system for statistical computation and graphics.
This is a plain R-base installation (see https://github.com/rocker-org/rocker/) repackaged by RCAC with an addition of a handful prerequisite libraries (libcurl, libopenssl, libxml2, libcairo2 and libXt) and their header files.
Docker hub: https://hub.docker.com/_/r-base and its home page: https://www.r-project.org/.
Link to section 'Versions' of 'r' Versions
- 4.1.1
Link to section 'Commands' of 'r' Commands
- R
- Rscript
Link to section 'Module' of 'r' Module
You can load the modules by:
module load biocontainers
module load r
Link to section 'Example job' of 'r' Example job
Using #!/bin/sh -l
as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use #!/bin/bash
instead.
To run R on our clusters:
#!/bin/bash
#SBATCH -A myallocation # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=r
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out
module --force purge
ml biocontainers r