multiqc
Link to section 'Introduction' of 'multiqc' Introduction
Multiqc is a reporting tool that parses summary statistics from results and log files generated by other bioinformatics tools.
For more information, please check its website: https://biocontainers.pro/tools/multiqc and its home page: https://multiqc.info.
Link to section 'Versions' of 'multiqc' Versions
- 1.11
Link to section 'Commands' of 'multiqc' Commands
- multiqc
Link to section 'Module' of 'multiqc' Module
You can load the modules by:
module load biocontainers
module load multiqc
Link to section 'Example job' of 'multiqc' Example job
Using #!/bin/sh -l as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use #!/bin/bash instead.
To run Multiqc on our clusters:
#!/bin/bash
#SBATCH -A myallocation # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=multiqc
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out
module --force purge
ml biocontainers multiqc
multiqc fastqc_out -o multiqc_out