gfaffix
Link to section 'Introduction' of 'gfaffix' Introduction
GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.
BioContainers: https://biocontainers.pro/tools/gfaffix
Home page: https://github.com/marschall-lab/GFAffix
Link to section 'Versions' of 'gfaffix' Versions
- 0.1.4
Link to section 'Commands' of 'gfaffix' Commands
- gfaffix
Link to section 'Module' of 'gfaffix' Module
You can load the modules by:
module load biocontainers
module load gfaffix
Link to section 'Example job' of 'gfaffix' Example job
Using #!/bin/sh -l as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use #!/bin/bash instead.
To run gfaffix on our clusters:
#!/bin/bash
#SBATCH -A myallocation # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=gfaffix
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out
module --force purge
ml biocontainers gfaffix