miniprot
Link to section 'Introduction' of 'miniprot' Introduction
Miniprot aligns a protein sequence against a genome with affine gap penalty, splicing and frameshift. It is primarily intended for annotating protein-coding genes in a new species using known genes from other species. Miniprot is similar to GeneWise and Exonerate in functionality but it can map proteins to whole genomes and is much faster at the residue alignment step.
Home page: https://github.com/lh3/miniprot
Link to section 'Versions' of 'miniprot' Versions
- 0.3
- 0.7
Link to section 'Commands' of 'miniprot' Commands
- miniprot
Link to section 'Module' of 'miniprot' Module
You can load the modules by:
module load biocontainers
module load miniprot
Link to section 'Example job' of 'miniprot' Example job
Using #!/bin/sh -l as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use #!/bin/bash instead.
To run miniprot on our clusters:
#!/bin/bash
#SBATCH -A myallocation # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=miniprot
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out
module --force purge
ml biocontainers miniprot