shapeit4
Link to section 'Introduction' of 'shapeit4' Introduction
SHAPEIT4 is a fast and accurate method for estimation of haplotypes (aka phasing) for SNP array and high coverage sequencing data.
BioContainers: https://biocontainers.pro/tools/shapeit4
Home page: https://odelaneau.github.io/shapeit4/
Link to section 'Versions' of 'shapeit4' Versions
- 4.2.2
Link to section 'Commands' of 'shapeit4' Commands
- shapeit4
Link to section 'Module' of 'shapeit4' Module
You can load the modules by:
module load biocontainers
module load shapeit4
Link to section 'Example job' of 'shapeit4' Example job
Using #!/bin/sh -l as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use #!/bin/bash instead.
To run shapeit4 on our clusters:
#!/bin/bash
#SBATCH -A myallocation # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=shapeit4
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out
module --force purge
ml biocontainers shapeit4