vcf-kit
Link to section 'Introduction' of 'vcf-kit' Introduction
VCF-kit is a command-line based collection of utilities for performing analysis on Variant Call Format (VCF) files.
BioContainers: https://biocontainers.pro/tools/vcf-kit
Home page: https://github.com/AndersenLab/VCF-kit
Link to section 'Versions' of 'vcf-kit' Versions
- 0.2.6
- 0.2.9
Link to section 'Commands' of 'vcf-kit' Commands
- vk
Link to section 'Module' of 'vcf-kit' Module
You can load the modules by:
module load biocontainers
module load vcf-kit
Link to section 'Example job' of 'vcf-kit' Example job
Using #!/bin/sh -l as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use #!/bin/bash instead.
To run vcf-kit on our clusters:
#!/bin/bash
#SBATCH -A myallocation # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=vcf-kit
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out
module --force purge
ml biocontainers vcf-kit