ldsc
Link to section 'Introduction' of 'ldsc' Introduction
ldsc is a command line tool for estimating heritability and genetic correlation from GWAS summary statistics.
BioContainers: https://biocontainers.pro/tools/ldsc
Home page: https://github.com/bulik/ldsc
Link to section 'Versions' of 'ldsc' Versions
- 1.0.1
Link to section 'Commands' of 'ldsc' Commands
- ldsc.py
- munge_sumstats.py
Link to section 'Module' of 'ldsc' Module
You can load the modules by:
module load biocontainers
module load ldsc
Link to section 'Example job' of 'ldsc' Example job
Using #!/bin/sh -l
as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use #!/bin/bash
instead.
To run ldsc on our clusters:
#!/bin/bash
#SBATCH -A myallocation # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=ldsc
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out
module --force purge
ml biocontainers ldsc