syri
Link to section 'Introduction' of 'syri' Introduction
Syri compares alignments between two chromosome-level assemblies and identifies synteny and structural rearrangements.
Home page: https://github.com/schneebergerlab/syri
Link to section 'Versions' of 'syri' Versions
- 1.6
Link to section 'Commands' of 'syri' Commands
- syri
Link to section 'Module' of 'syri' Module
You can load the modules by:
module load biocontainers
module load syri
Link to section 'Example job' of 'syri' Example job
Using #!/bin/sh -l as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use #!/bin/bash instead.
To run syri on our clusters:
#!/bin/bash
#SBATCH -A myallocation # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=syri
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out
module --force purge
ml biocontainers syri
syri -c out.sam -r refgenome -q qrygenome -k -F S