fasta3
Link to section 'Introduction' of 'fasta3' Introduction
Fasta3 is a suite of programs for searching nucleotide or protein databases with a query sequence.
For more information, please check its website: https://biocontainers.pro/tools/fasta3 and its home page on Github.
Link to section 'Versions' of 'fasta3' Versions
- 36.3.8
Link to section 'Commands' of 'fasta3' Commands
- fasta36
- fastf36
- fastm36
- fasts36
- fastx36
- fasty36
- ggsearch36
- glsearch36
- lalign36
- ssearch36
- tfastf36
- tfastm36
- tfasts36
- tfastx36
- tfasty36
Link to section 'Module' of 'fasta3' Module
You can load the modules by:
module load biocontainers
module load fasta3
Link to section 'Example job' of 'fasta3' Example job
Using #!/bin/sh -l as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use #!/bin/bash instead.
To run Fasta3 on our clusters:
#!/bin/bash
#SBATCH -A myallocation # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=fasta3
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out
module --force purge
ml biocontainers fasta3
fasta36 input.fasta genome.fasta