n50
Link to section 'Introduction' of 'n50' Introduction
N50 is a command line tool to calculate assembly metrices.
BioContainers: https://biocontainers.pro/tools/n50
Home page: https://github.com/quadram-institute-bioscience/seqfu/wiki/n50
Link to section 'Versions' of 'n50' Versions
- 1.5.6
Link to section 'Commands' of 'n50' Commands
- n50
Link to section 'Module' of 'n50' Module
You can load the modules by:
module load biocontainers
module load n50
Link to section 'Example job' of 'n50' Example job
Using #!/bin/sh -l as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use #!/bin/bash instead.
To run n50 on our clusters:
#!/bin/bash
#SBATCH -A myallocation # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=n50
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out
module --force purge
ml biocontainers n50