cross_match
Link to section 'Introduction' of 'cross_match' Introduction
cross_match is a general purpose utility for comparing any two DNA sequence sets using a 'banded' version of swat.
For more information, please check its home page: http://www.phrap.org/phredphrapconsed.html#block_phrap.
Link to section 'Versions' of 'cross_match' Versions
- 1.090518
Link to section 'Commands' of 'cross_match' Commands
- cross_match
Link to section 'Module' of 'cross_match' Module
You can load the modules by:
module load biocontainers
module load cross_match
Link to section 'Example job' of 'cross_match' Example job
Using #!/bin/sh -l as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use #!/bin/bash instead.
To run cross_match on our clusters:
#!/bin/bash
#SBATCH -A myallocation # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=cross_match
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out
module --force purge
ml biocontainers cross_match