t-coffee
Link to section 'Introduction' of 't-coffee' Introduction
T-coffee
is a multiple sequence alignment software using a progressive approach.
For more information, please check its website: https://biocontainers.pro/tools/t-coffee and its home page on Github.
Link to section 'Versions' of 't-coffee' Versions
- 13.45.0.4846264
Link to section 'Commands' of 't-coffee' Commands
- t_coffee
Link to section 'Module' of 't-coffee' Module
You can load the modules by:
module load biocontainers
module load t-coffee
Link to section 'Example job' of 't-coffee' Example job
Using #!/bin/sh -l
as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use #!/bin/bash
instead.
To run T-coffee on our clusters:
#!/bin/bash
#SBATCH -A myallocation # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=t-coffee
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out
module --force purge
ml biocontainers t-coffee
t_coffee OG0002077.fa -mode expresso