dragonflye
Link to section 'Introduction' of 'dragonflye' Introduction
Dragonflye is a pipeline that aims to make assembling Oxford Nanopore reads quick and easy.
BioContainers: https://biocontainers.pro/tools/dragonflye
Home page: https://github.com/rpetit3/dragonflye
Link to section 'Versions' of 'dragonflye' Versions
- 1.0.13
- 1.0.14
Link to section 'Commands' of 'dragonflye' Commands
- dragonflye
Link to section 'Module' of 'dragonflye' Module
You can load the modules by:
module load biocontainers
module load dragonflye
Link to section 'Example job' of 'dragonflye' Example job
Using #!/bin/sh -l as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use #!/bin/bash instead.
To run dragonflye on our clusters:
#!/bin/bash
#SBATCH -A myallocation # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 8
#SBATCH --job-name=dragonflye
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out
module --force purge
ml biocontainers dragonflye
dragonflye --cpus 8 \
--outdir output \
--reads SRR18498195.fastq