scvi-tools
Link to section 'Introduction' of 'scvi-tools' Introduction
scvi-tools (single-cell variational inference tools) is a package for end-to-end analysis of single-cell omics data primarily developed and maintained by the Yosef Lab at UC Berkeley.
Home page: https://scvi-tools.org
Link to section 'Versions' of 'scvi-tools' Versions
- 0.16.2
Link to section 'Commands' of 'scvi-tools' Commands
- python
- python3
- R
- Rscript
Link to section 'Module' of 'scvi-tools' Module
You can load the modules by:
module load biocontainers
module load scvi-tools
Link to section 'Example job' of 'scvi-tools' Example job
Using #!/bin/sh -l as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use #!/bin/bash instead.
To run scvi-tools on our clusters:
#!/bin/bash
#SBATCH -A myallocation # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=scvi-tools
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out
module --force purge
ml biocontainers scvi-tools