mafft
Link to section 'Introduction' of 'mafft' Introduction
MAFFT is a multiple alignment program for amino acid or nucleotide sequences.
For more information, please check its website: https://biocontainers.pro/tools/mafft and its home page: https://mafft.cbrc.jp/alignment/software/.
Link to section 'Versions' of 'mafft' Versions
- 7.475
- 7.490
Link to section 'Commands' of 'mafft' Commands
- einsi
- fftns
- fftnsi
- ginsi
- linsi
- mafft
- mafft-distance
- mafft-einsi
- mafft-fftns
- mafft-fftnsi
- mafft-ginsi
- mafft-homologs.rb
- mafft-linsi
- mafft-nwns
- mafft-nwnsi
- mafft-profile
- mafft-qinsi
- mafft-sparsecore.rb
- mafft-xinsi
- nwns
- nwnsi
Link to section 'Module' of 'mafft' Module
You can load the modules by:
module load biocontainers
module load mafft
Link to section 'Example job' of 'mafft' Example job
Using #!/bin/sh -l as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use #!/bin/bash instead.
To run MAFFT on our clusters:
#!/bin/bash
#SBATCH -A myallocation # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=mafft
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out
module --force purge
ml biocontainers mafft