memes
Link to section 'Introduction' of 'memes' Introduction
memes is an R interface to the MEME Suite family of tools, which provides several utilities for performing motif analysis on DNA, RNA, and protein sequences. memes works by detecting a local install of the MEME suite, running the commands, then importing the results directly into R.
Docker hub: https://hub.docker.com/r/snystrom/memes_docker
Home page: https://github.com/snystrom/memes
Link to section 'Versions' of 'memes' Versions
- 1.1.2
Link to section 'Commands' of 'memes' Commands
- R
Link to section 'Module' of 'memes' Module
You can load the modules by:
module load biocontainers
module load memes
Link to section 'Example job' of 'memes' Example job
Using #!/bin/sh -l as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use #!/bin/bash instead.
To run memes on our clusters:
#!/bin/bash
#SBATCH -A myallocation # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=memes
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out
module --force purge
ml biocontainers memes