pyranges
Link to section 'Introduction' of 'pyranges' Introduction
Pyranges are collections of intervals that support comparison operations (like overlap and intersect) and other methods that are useful for genomic analyses.
For more information, please check its website: https://biocontainers.pro/tools/pyranges and its home page on Github.
Link to section 'Versions' of 'pyranges' Versions
- 0.0.115
Link to section 'Commands' of 'pyranges' Commands
- python
- python3
Link to section 'Module' of 'pyranges' Module
You can load the modules by:
module load biocontainers
module load pyranges
Link to section 'Example job' of 'pyranges' Example job
Using #!/bin/sh -l as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use #!/bin/bash instead.
To run Pyranges on our clusters:
#!/bin/bash
#SBATCH -A myallocation # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=pyranges
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out
module --force purge
ml biocontainers pyranges