circexplorer2
Link to section 'Introduction' of 'circexplorer2' Introduction
CIRCexplorer2 is a comprehensive and integrative circular RNA analysis toolset. It is the successor of CIRCexplorer with plenty of new features to facilitate circular RNA identification and characterization.
BioContainers: https://biocontainers.pro/tools/circexplorer2
Home page: https://github.com/YangLab/CIRCexplorer2
Link to section 'Versions' of 'circexplorer2' Versions
- 2.3.8
Link to section 'Commands' of 'circexplorer2' Commands
- CIRCexplorer2
- fast_circ.py
- fetch_ucsc.py
Link to section 'Module' of 'circexplorer2' Module
You can load the modules by:
module load biocontainers
module load circexplorer2
Link to section 'Example job' of 'circexplorer2' Example job
Using #!/bin/sh -l as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use #!/bin/bash instead.
To run circexplorer2 on our clusters:
#!/bin/bash
#SBATCH -A myallocation # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=circexplorer2
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out
module --force purge
ml biocontainers circexplorer2