exonerate
Link to section 'Introduction' of 'exonerate' Introduction
Exonerate is a generic tool for pairwise sequence comparison/alignment.
For more information, please check its home page: https://www.ebi.ac.uk/about/vertebrate-genomics/software/exonerate.
Link to section 'Versions' of 'exonerate' Versions
- 2.4.0
Link to section 'Commands' of 'exonerate' Commands
- exonerate
Link to section 'Module' of 'exonerate' Module
You can load the modules by:
module load biocontainers
module load exonerate
Link to section 'Example job' of 'exonerate' Example job
Using #!/bin/sh -l as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use #!/bin/bash instead.
To run Exonerate on our clusters:
#!/bin/bash
#SBATCH -A myallocation # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=exonerate
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out
module --force purge
ml biocontainers exonerate
exonerate -m genome2genome cms.fasta cmm.fasta > cm_vs_cs.out