repeatmodeler
Link to section 'Introduction' of 'repeatmodeler' Introduction
RepeatModeler is a de novo transposable element (TE) family identification and modeling package.
For more information, please check its website: https://biocontainers.pro/tools/repeatmodeler and its home page: http://www.repeatmasker.org/RepeatModeler/.
Link to section 'Versions' of 'repeatmodeler' Versions
- 2.0.2
- 2.0.3
Link to section 'Commands' of 'repeatmodeler' Commands
- RepeatModeler
- BuildDatabase
- RepeatClassifier
Link to section 'Module' of 'repeatmodeler' Module
You can load the modules by:
module load biocontainers
module load repeatmodeler
Link to section 'Example job' of 'repeatmodeler' Example job
Using #!/bin/sh -l as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use #!/bin/bash instead.
To run RepeatModeler on our clusters:
#!/bin/bash
#SBATCH -A myallocation # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=repeatmodeler
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out
module --force purge
ml biocontainers repeatmodeler