kmergenie
Link to section 'Introduction' of 'kmergenie' Introduction
KmerGenie estimates the best k-mer length for genome de novo assembly.
BioContainers: https://biocontainers.pro/tools/kmergenie
Home page: http://kmergenie.bx.psu.edu
Link to section 'Versions' of 'kmergenie' Versions
- 1.7051
Link to section 'Commands' of 'kmergenie' Commands
- kmergenie
Link to section 'Module' of 'kmergenie' Module
You can load the modules by:
module load biocontainers
module load kmergenie
Link to section 'Example job' of 'kmergenie' Example job
Using #!/bin/sh -l as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use #!/bin/bash instead.
To run kmergenie on our clusters:
#!/bin/bash
#SBATCH -A myallocation # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=kmergenie
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out
module --force purge
ml biocontainers kmergenie