pixy
Link to section 'Introduction' of 'pixy' Introduction
pixy is a command-line tool for painlessly estimating average nucleotide diversity within (π) and between (dxy) populations from a VCF.
Home page: https://github.com/ksamuk/pixy
Link to section 'Versions' of 'pixy' Versions
- 1.2.7
Link to section 'Commands' of 'pixy' Commands
- pixy
Link to section 'Module' of 'pixy' Module
You can load the modules by:
module load biocontainers
module load pixy
Link to section 'Example job' of 'pixy' Example job
Using #!/bin/sh -l as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use #!/bin/bash instead.
To run pixy on our clusters:
#!/bin/bash
#SBATCH -A myallocation # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=pixy
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out
module --force purge
ml biocontainers pixy