signalp4
Link to section 'Introduction' of 'signalp4' Introduction
SignalP predicts the presence and location of signal peptide cleavage sites in amino acid sequences from different organisms: Gram-positive prokaryotes, Gram-negative prokaryotes, and eukaryotes.
For more information, please check its home page: https://services.healthtech.dtu.dk/service.php?SignalP-4.1.
Link to section 'Versions' of 'signalp4' Versions
- 4.1
Link to section 'Commands' of 'signalp4' Commands
- signalp
Link to section 'Module' of 'signalp4' Module
You can load the modules by:
module load biocontainers
module load signalp
Link to section 'Example job' of 'signalp4' Example job
Using #!/bin/sh -l as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use #!/bin/bash instead.
To run SignalP on our clusters:
#!/bin/bash
#SBATCH -A myallocation # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=signalp
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out
module --force purge
ml biocontainers signalp
signalp -t gram+ -f all proka.fasta > proka_out
signalp -t euk -f all euk.fasta > euk.out