assembly-stats
Link to section 'Introduction' of 'assembly-stats' Introduction
Assembly-stats is a tool to get assembly statistics from FASTA and FASTQ files.
For more information, please check its website: https://biocontainers.pro/tools/assembly-stats and its home page on Github.
Link to section 'Versions' of 'assembly-stats' Versions
- 1.0.1
Link to section 'Commands' of 'assembly-stats' Commands
- assembly-stats
Link to section 'Module' of 'assembly-stats' Module
You can load the modules by:
module load biocontainers
module load assembly-stats
Link to section 'Example job' of 'assembly-stats' Example job
Using #!/bin/sh -l as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use #!/bin/bash instead.
To run Assembly-stats on our our clusters:
#!/bin/bash
#SBATCH -A myallocation # Allocation name
#SBATCH -t 00:10:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=assembly-stats
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out
module --force purge
ml biocontainers assembly-stats
assembly-stats seq.fasta