ldhat
Link to section 'Introduction' of 'ldhat' Introduction
LDhat is a package written in the C and C++ languages for the analysis of recombination rates from population genetic data.
Home page: https://github.com/auton1/LDhat
Link to section 'Versions' of 'ldhat' Versions
- 2.2a
Link to section 'Commands' of 'ldhat' Commands
- convert
- pairwise
- interval
- rhomap
- fin
Link to section 'Module' of 'ldhat' Module
You can load the modules by:
module load biocontainers
module load ldhat
Link to section 'Example job' of 'ldhat' Example job
Using #!/bin/sh -l as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use #!/bin/bash instead.
To run ldhat on our clusters:
#!/bin/bash
#SBATCH -A myallocation # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=ldhat
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out
module --force purge
ml biocontainers ldhat