platypus
Link to section 'Introduction' of 'platypus' Introduction
Platypus is a tool designed for efficient and accurate variant-detection in high-throughput sequencing data.
For more information, please check its website: https://biocontainers.pro/tools/platypus
Link to section 'Versions' of 'platypus' Versions
- 0.8.1
Link to section 'Commands' of 'platypus' Commands
- platypus
Link to section 'Module' of 'platypus' Module
You can load the modules by:
module load biocontainers
module load platypus
Link to section 'Example job' of 'platypus' Example job
Using #!/bin/sh -l as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use #!/bin/bash instead.
To run Platypus on our clusters:
#!/bin/bash
#SBATCH -A myallocation # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=platypus
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out
module --force purge
ml biocontainers platypus