beast2
Link to section 'Introduction' of 'beast2' Introduction
BEAST 2 is a cross-platform program for Bayesian phylogenetic analysis of molecular sequences.
For more information, please check its website: https://biocontainers.pro/tools/beast2 and its home page: https://www.beast2.org.
Link to section 'Versions' of 'beast2' Versions
- 2.6.3
- 2.6.4
- 2.6.6
Link to section 'Commands' of 'beast2' Commands
- applauncher
- beast
- beauti
- densitree
- loganalyser
- logcombiner
- packagemanager
- treeannotator
Link to section 'Module' of 'beast2' Module
You can load the modules by:
module load biocontainers
module load beast2
Link to section 'Example job' of 'beast2' Example job
Using #!/bin/sh -l as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use #!/bin/bash instead.
To run BEAST 2 on our clusters:
#!/bin/bash
#SBATCH -A myallocation # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 4
#SBATCH --job-name=beast2
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out
module --force purge
ml biocontainers beast2
beast -threads 4 -prefix input input.xml