eggnog-mapper
Link to section 'Introduction' of 'eggnog-mapper' Introduction
Eggnog-mapper is a tool for fast functional annotation of novel sequences.
For more information, please check its website: https://biocontainers.pro/tools/eggnog-mapper and its home page on Github.
Link to section 'Versions' of 'eggnog-mapper' Versions
- 2.1.7
Link to section 'Commands' of 'eggnog-mapper' Commands
- create_dbs.py
- download_eggnog_data.py
- emapper.py
- hmm_mapper.py
- hmm_server.py
- hmm_worker.py
- vba_extract.py
Link to section 'Module' of 'eggnog-mapper' Module
You can load the modules by:
module load biocontainers
module load eggnog-mapper
Link to section 'Example job' of 'eggnog-mapper' Example job
Using #!/bin/sh -l as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use #!/bin/bash instead.
To run Eggnog-mapper on our clusters:
#!/bin/bash
#SBATCH -A myallocation # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 24
#SBATCH --job-name=eggnog-mapper
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out
module --force purge
ml biocontainers eggnog-mapper
emapper.py -i proteins.faa --cpu 24 -o protein.out
emapper.py -m diamond --itype CDS -i cDNA.fasta -o cdna.out --cpu 24