piscem
Link to section 'Introduction' of 'piscem' Introduction
piscem is a rust wrapper for a next-generation index + mapper tool (still currently written in C++17).
BioContainers: https://biocontainers.pro/tools/piscem
Home page: https://github.com/COMBINE-lab/piscem
Link to section 'Versions' of 'piscem' Versions
- 0.4.3
Link to section 'Commands' of 'piscem' Commands
- piscem
Link to section 'Module' of 'piscem' Module
You can load the modules by:
module load biocontainers
module load piscem
Link to section 'Example job' of 'piscem' Example job
Using #!/bin/sh -l as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use #!/bin/bash instead.
To run piscem on our clusters:
#!/bin/bash
#SBATCH -A myallocation # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=piscem
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out
module --force purge
ml biocontainers piscem