orthofinder
OrthoFinder: phylogenetic orthology inference for comparative genomics
Detailed usage can be found here: https://github.com/davidemms/OrthoFinder
Link to section 'Versions' of 'orthofinder' Versions
- 2.5.2
- 2.5.4
Link to section 'Commands' of 'orthofinder' Commands
- orthofinder
Link to section 'Module' of 'orthofinder' Module
You can load the modules by:
module load biocontainers
module load orthofinder/2.5.4
Link to section 'Example job' of 'orthofinder' Example job
Using #!/bin/sh -l as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use #!/bin/bash instead.
To run orthofinder on our our clusters:
#!/bin/bash
#SBATCH -A myallocation # Allocation name
#SBATCH -t 20:00:00
#SBATCH -N 1
#SBATCH -n 24
#SBATCH --job-name=orthofinder
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out
module --force purge
ml biocontainers orthofinder/2.5.4
orthofinder -t 24 -f InputData -o output