cicero
Link to section 'Introduction' of 'cicero' Introduction
CICERO (Clipped-reads Extended for RNA Optimization) is an assembly-based algorithm to detect diverse classes of driver gene fusions from RNA-seq.
For more information, please check its home page on Github.
Link to section 'Versions' of 'cicero' Versions
- 1.8.1
Link to section 'Commands' of 'cicero' Commands
- Cicero.sh
Link to section 'Module' of 'cicero' Module
You can load the modules by:
module load biocontainers
module load cicero
Link to section 'Example job' of 'cicero' Example job
Using #!/bin/sh -l as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use #!/bin/bash instead.
To run CICERO on our clusters:
#!/bin/bash
#SBATCH -A myallocation # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=cicero
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out
module --force purge
ml biocontainers cicero