epic2
Link to section 'Introduction' of 'epic2' Introduction
Epic2
is an ultraperformant Chip-Seq broad domain finder based on SICER.
For more information, please check its website: https://biocontainers.pro/tools/epic2 and its home page on Github.
Link to section 'Versions' of 'epic2' Versions
- 0.0.51
- 0.0.52
Link to section 'Commands' of 'epic2' Commands
- epic2
- epic2-bw
- epic2-df
Link to section 'Module' of 'epic2' Module
You can load the modules by:
module load biocontainers
module load epic2
Link to section 'Example job' of 'epic2' Example job
Using #!/bin/sh -l
as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use #!/bin/bash
instead.
To run Epic2 on our clusters:
#!/bin/bash
#SBATCH -A myallocation # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=epic2
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out
module --force purge
ml biocontainers epic2
epic2 -t /examples/test.bed.gz \
-c /examples/control.bed.gz \
> deleteme.txt